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Array Data Analysis Group

for the statistical analysis of data arising from DNA and tissue microarrays

Positions Available

Description

The Array Data Analysis Group (ADAG) specializes in the analysis of DNA microarray, tissue array, and proteomics data and is comprised of faculty and students in the departments of Human Genetics, Biostatistics, and the Bioinformatics Program.  ADAG has 3 missions: education, data analysis and research.

 

Members

·         Current Members

Tissue array false colour picture generated using Matlab

·       Prof. Steve Horvath (Head)

·       Prof. David Elashoff

·       Prof. Janet Sinsheimer

·       Prof. Steve Cole

·       Prof. Marc Suchard

·       Zixing(Zeke) Fang Ph.D.

DNA Microarray picture

·       Tuyen Hoang

·       Meghna Kamath

·       Ai Li

·       Vladimir Minin

·       Myungshin Oh

·       Moira Regelson Ph.D.

·       Bin Zhang Ph.D.

 

·         Former Members

·       Xinping Cui Ph.D. (now Assistant Professor of Statistics, UC Riverside)

·       Yunda Huang Ph.D. (now Bioinformatics Specialist at Salk Institute, La Jolla)

·       Pete Kraft Ph.D. (now Assistant Professor of Epidemiology, Harvard School of Public Health)

·       Xueli Liu Ph.D.

·       Tao Shi

 

Data Analysis Service

     For practitioners who do not want to install the necessary analysis software or who do not have the time to analyze their own data, ADAG offers a data analysis service. A statistician who routinely analyzes microarray data will provide a quality data analysis at a low cost (non-profit operation).  We will not only provide initial statistical consulting but also write up a data analysis report that can be directly integrated into an ensuing publication.  To make this data analysis service available to as many users as possible and for as long as it is needed, we will charge a fee to recover our costs.

 

Courses

Winter 2004 BIOSTAT M278. Statistical Analysis of DNA Microarray Data  Online lecture Basic Statistical Methods for Analyzing DNA Microarray Data  

 

Software

 

*  dChip

*  Genespring

*  Genecluster

*  R (clone of S-Plus)

*  Matlab

*  CART

 

Publications

 

Honors/Awards

 

Collaborators at UCLA

 

*  Tissue Array Core Facility       Aarno Palotie, MD PhD  or David Seligson, MD

*  DNA Microarray Core Facility   Dr. Stan Nelson's lab

*  The Gene Expression Core    Dr. Christopher Denny 

*  Statistical Genetics Group

*  Please contact us if you want to be listed

 

Miscellaneous

 

*  Group picture

*  Steve’s Joke on Data Classification

*  A comprehensive collection of microarray papers

 

 

Contact information

 

Steve Horvath

Email: shorvath@mednet.ucla.edu

Fax: 310-794-5446

 

 

 

 

 

 

 

For comments and/or suggestions regarding site content, please contact

Tao Shi at shitao@ucla.edu

 

Copyright © 2003 Tao Shi, Department of Human Genetics, UCLA. All Rights Reserved

Last Revision: 09/19/03

 

 

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